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Quantitative Biology > Other Quantitative Biology

arXiv:2108.09499 (q-bio)
[Submitted on 21 Aug 2021 (v1), last revised 23 Feb 2022 (this version, v2)]

Title:MITI Minimum Information guidelines for highly multiplexed tissue images

Authors:Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M. Reynolds, Yu-An Chen, Damir Sudar, Yubin Xie, Jeremy L. Muhlich, Raquel Arias-Camison, Sarah Arena, Adam J. Taylor, Milen Nikolov, Madison Tyler, Jia-Ren Lin, Erik A. Burlingame, Human Tumor Atlas Network, Young H. Chang, Samouil L Farhi, Vésteinn Thorsson, Nithya Venkatamohan, Julia L. Drewes, Dana Pe'er, David A. Gutman, Markus D. Herrmann, Nils Gehlenborg, Peter Bankhead, Joseph T. Roland, John M. Herndon, Michael P. Snyder, Michael Angelo, Garry Nolan, Jason R. Swedlow, Nikolaus Schultz, Daniel T. Merrick, Sarah A. Mazzilli, Ethan Cerami, Scott J. Rodig, Sandro Santagata, Peter K. Sorger
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Abstract:The imminent release of tissue atlases combining multi-channel microscopy with single cell sequencing and other omics data from normal and diseased specimens creates an urgent need for data and metadata standards that guide data deposition, curation and release. We describe a Minimum Information about highly multiplexed Tissue Imaging (MITI) standard that applies best practices developed for genomics and other microscopy data to highly multiplexed tissue images and traditional histology.
Subjects: Other Quantitative Biology (q-bio.OT); Image and Video Processing (eess.IV)
Cite as: arXiv:2108.09499 [q-bio.OT]
  (or arXiv:2108.09499v2 [q-bio.OT] for this version)
  https://doi.org/10.48550/arXiv.2108.09499

Submission history

From: Denis Schapiro [view email]
[v1] Sat, 21 Aug 2021 12:17:45 UTC (942 KB)
[v2] Wed, 23 Feb 2022 17:06:09 UTC (889 KB)
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