Biomolecules

Authors and titles for recent submissions

• Mon, 20 Jan 2025
• Fri, 17 Jan 2025
• Thu, 16 Jan 2025
• Wed, 15 Jan 2025
• Tue, 14 Jan 2025

See today's new changes

Mon, 20 Jan 2025 (showing 2 of 2 entries )

[1] arXiv:2501.10282 (cross-list from cs.CE) [pdf, html, other]

Title: Computational Protein Science in the Era of Large Language Models (LLMs)

Wenqi Fan, Yi Zhou, Shijie Wang, Yuyao Yan, Hui Liu, Qian Zhao, Le Song, Qing Li

Subjects: Computational Engineering, Finance, and Science (cs.CE); Computation and Language (cs.CL); Biomolecules (q-bio.BM)

[2] arXiv:2501.10004 (cross-list from physics.bio-ph) [pdf, html, other]

Title: Static Three-Dimensional Structures Determine Fast Dynamics Between Distal Loci Pairs in Interphase Chromosomes

Guang Shi, Sucheol Shin, D. Thirumalai

Subjects: Biological Physics (physics.bio-ph); Biomolecules (q-bio.BM); Genomics (q-bio.GN)

Fri, 17 Jan 2025

No updates for this time period.

Thu, 16 Jan 2025 (showing 2 of 2 entries )

[3] arXiv:2501.08754 (cross-list from cond-mat.soft) [pdf, other]

Title: Investigation on non-ergodicity of protein dynamics

Luca Maggi

Subjects: Soft Condensed Matter (cond-mat.soft); Biological Physics (physics.bio-ph); Biomolecules (q-bio.BM)

[4] arXiv:2501.08508 (cross-list from cs.LG) [pdf, html, other]

Title: Score-based 3D molecule generation with neural fields

Matthieu Kirchmeyer, Pedro O. Pinheiro, Saeed Saremi

Comments: NeurIPS 2024

Subjects: Machine Learning (cs.LG); Biomolecules (q-bio.BM)

Wed, 15 Jan 2025

No updates for this time period.

Tue, 14 Jan 2025 (showing 2 of 2 entries )

[5] arXiv:2501.06371 [pdf, html, other]

Title: COLOR: A compositional linear operation-based representation of protein sequences for identification of monomer contributions to properties

Akash Pandey, Wei Chen, Sinan Keten

Subjects: Biomolecules (q-bio.BM)

[6] arXiv:2501.06615 (cross-list from math.NA) [pdf, html, other]

Title: A Nonlocal size modified Poisson-Boltzmann Model and Its Finite Element Solver for Protein in Multi-Species Ionic Solution

Dexuan Xie, Liam Jemison, Yi Jiang

Comments: 30 pages, 7 figures, 3 tables

Subjects: Numerical Analysis (math.NA); Biomolecules (q-bio.BM)