Skip to main content
We gratefully acknowledge support from the Simons Foundation, member institutions, and all contributors. Donate
arXiv logo
Cornell University Logo

Populations and Evolution

Authors and titles for recent submissions

See today's new changes

Total of 27 entries
Showing up to 50 entries per page: fewer | more | all

Thu, 21 Nov 2024 (showing 5 of 5 entries )

[1] arXiv:2411.13380 [pdf, html, other]
Title: Bounds on the Treewidth of Level-k Rooted Phylogenetic Networks
Alexey Markin, Sriram Vijendran, Oliver Eulenstein
Subjects: Populations and Evolution (q-bio.PE); Combinatorics (math.CO)
[2] arXiv:2411.13228 [pdf, other]
Title: A general relationship between population size and extinction risk
Thomas S Ball, Ben Balmford, Andrew Balmford, Daniele Rinaldo, Piero Visconti, Rhys Green
Subjects: Populations and Evolution (q-bio.PE)
[3] arXiv:2411.13130 [pdf, html, other]
Title: The impact of recovery rate heterogeneity in achieving herd immunity
Gabriel Turinici
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)
[4] arXiv:2411.13048 [pdf, html, other]
Title: Conditional gene genealogies given the population pedigree for a diploid Moran model with selfing
Maximillian Newman, John Wakeley, Wai-Tong Louis Fan
Comments: 60 pages, 9 figures
Subjects: Populations and Evolution (q-bio.PE); Probability (math.PR)
[5] arXiv:2411.12957 [pdf, other]
Title: Computational and Experimental Exploration of Protein Fitness Landscapes: Navigating Smooth and Rugged Terrains
Mahakaran Sandhu (1,2), John Chen (1,5), Dana Matthews (1,2), Matthew A Spence (1,2), Sacha B Pulsford (1,2), Barnabas Gall (1,2), James Nichols (3), Nobuhiko Tokuriki (4), Colin J Jackson (1,2,3,5) ((1) Research School of Chemistry, Australian National University, (2) Centre of Excellence for Innovations in Peptide & Protein Science, Research School of Chemistry, Australian National University, (3) Research School of Biology, Australian National University, (4) Michael Smith Laboratories, University of British Columbia, (5) ARC Centre of Excellence in Synthetic Biology, Research School of Biology, Australian National University)
Comments: 16 pages, 4 figures, submitted to Biochemistry
Subjects: Populations and Evolution (q-bio.PE)

Wed, 20 Nov 2024 (showing 3 of 3 entries )

[6] arXiv:2411.12370 (cross-list from q-bio.BM) [pdf, html, other]
Title: Rapid response to fast viral evolution using AlphaFold 3-assisted topological deep learning
JunJie Wee, Guo-Wei Wei
Comments: 21 pages, 4 figures
Subjects: Biomolecules (q-bio.BM); Populations and Evolution (q-bio.PE); Quantitative Methods (q-bio.QM)
[7] arXiv:2411.12348 (cross-list from physics.soc-ph) [pdf, html, other]
Title: Environmental variability promotes the evolution of cooperation among geographically dispersed groups on dynamic networks
Masaaki Inaba, Eizo Akiyama
Subjects: Physics and Society (physics.soc-ph); Dynamical Systems (math.DS); Populations and Evolution (q-bio.PE)
[8] arXiv:2411.12232 (cross-list from math.AP) [pdf, html, other]
Title: Wavespeed selection of travelling wave solutions of a two-component reaction-diffusion model of cell invasion
Yuhui Chen, Michael C. Dallaston
Subjects: Analysis of PDEs (math.AP); Populations and Evolution (q-bio.PE)

Tue, 19 Nov 2024 (showing 8 of 8 entries )

[9] arXiv:2411.11602 [pdf, html, other]
Title: Relating dynamics and structure of discrete and continuous time systems
Shuyun Jiao, David Waxman
Comments: 32 pages, 7 figures
Subjects: Populations and Evolution (q-bio.PE); Exactly Solvable and Integrable Systems (nlin.SI); Quantitative Methods (q-bio.QM)
[10] arXiv:2411.11010 [pdf, html, other]
Title: Phase transition to coexistence in transposon populations
Aria Yom, Nathan E. Lewis
Subjects: Populations and Evolution (q-bio.PE)
[11] arXiv:2411.10972 [pdf, other]
Title: Random walk models in the life sciences: including births, deaths and local interactions
Michael J. Plank, Matthew J. Simpson, Ruth E. Baker
Subjects: Populations and Evolution (q-bio.PE)
[12] arXiv:2411.10551 [pdf, html, other]
Title: The role of inducible defence in ecological models: Effects of nonlocal intraspecific competitions
Sangeeta Saha, Swadesh Pal, Roderick Melnik
Comments: arXiv admin note: text overlap with arXiv:2310.01392
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)
[13] arXiv:2411.10536 [pdf, html, other]
Title: Emergent kin selection of altruistic feeding via non-episodic neuroevolution
Max Taylor-Davies, Gautier Hamon, Timothé Boulet, Clément Moulin-Frier
Comments: 13 pages, 5 figures
Subjects: Populations and Evolution (q-bio.PE); Neural and Evolutionary Computing (cs.NE)
[14] arXiv:2411.11368 (cross-list from cond-mat.stat-mech) [pdf, html, other]
Title: Optimal reduction of an epidemic outbreak size via temporary quarantine
Eyal Atias, Michael Assaf
Comments: 10 pages, 6 figures
Subjects: Statistical Mechanics (cond-mat.stat-mech); Computational Physics (physics.comp-ph); Populations and Evolution (q-bio.PE)
[15] arXiv:2411.10486 (cross-list from cs.LG) [pdf, html, other]
Title: Artificial Intelligence for Infectious Disease Prediction and Prevention: A Comprehensive Review
Selestine Melchane, Youssef Elmir, Farid Kacimi, Larbi Boubchir
Comments: 31 pages, 5 figures, this manuscript has been accepted for publication in ACTA UNIVERSITATIS SAPIENTIAE, Informatica
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Populations and Evolution (q-bio.PE)
[16] arXiv:2411.10459 (cross-list from cs.MA) [pdf, html, other]
Title: Evolutionary Multi-agent Reinforcement Learning in Group Social Dilemmas
Brian Mintz, Feng Fu
Subjects: Multiagent Systems (cs.MA); Populations and Evolution (q-bio.PE)

Mon, 18 Nov 2024 (showing 5 of 5 entries )

[17] arXiv:2411.10424 [pdf, other]
Title: Using sequence data to study spatial scales of interactions driving spread of Highly Pathogenic Avian Influenza in Great Britain
Anna Gamża (1), Sam Lycett (1), Aeron Sanchez (1), Rowland Kao (1 and 2) ((1) The Roslin Institute- University of Edinburgh- Edinburgh- UK, (2) School of Physics and Astronomy- University of Edinburgh- Edinburgh- UK)
Subjects: Populations and Evolution (q-bio.PE)
[18] arXiv:2411.10167 [pdf, html, other]
Title: Gamma Distribution for Equilibrium Analysis of Discrete Stochastic Logistic Population Models
Haiyan Wang
Subjects: Populations and Evolution (q-bio.PE)
[19] arXiv:2411.09779 [pdf, html, other]
Title: Variational methods for Learning Multilevel Genetic Algorithms using the Kantorovich Monad
Jonathan Warrell, Francesco Alesiani, Cameron Smith, Anja Mösch, Martin Renqiang Min
Comments: 18 pages, 3 figures
Subjects: Populations and Evolution (q-bio.PE); Neural and Evolutionary Computing (cs.NE); Category Theory (math.CT)
[20] arXiv:2411.09778 [pdf, html, other]
Title: Epidemic outbreaks in structured host populations
Horst R Thieme
Comments: 47 pages
Subjects: Populations and Evolution (q-bio.PE); Analysis of PDEs (math.AP)
[21] arXiv:2411.10074 (cross-list from cs.CV) [pdf, html, other]
Title: Improving the accuracy of automated labeling of specimen images datasets via a confidence-based process
Quentin Bateux, Jonathan Koss, Patrick W. Sweeney, Erika Edwards, Nelson Rios, Aaron M. Dollar
Subjects: Computer Vision and Pattern Recognition (cs.CV); Populations and Evolution (q-bio.PE)

Fri, 15 Nov 2024 (showing 6 of 6 entries )

[22] arXiv:2411.09136 [pdf, html, other]
Title: Lattice-based stochastic models motivate non-linear diffusion descriptions of memory-based dispersal
Yifei Li, Matthew J Simpson, Chuncheng Wang
Comments: 9 figures
Subjects: Populations and Evolution (q-bio.PE); Analysis of PDEs (math.AP)
[23] arXiv:2411.09092 [pdf, html, other]
Title: Pheromone-Guided Navigation of Potential Mates: A Distinct Exploration Strategy
Nick Dashti, M. N. Najafi, Debra J. Searles
Comments: 22 pages including 7 figures and 2 tables; and 7 additional pages of supplementary information
Subjects: Populations and Evolution (q-bio.PE); Biological Physics (physics.bio-ph); Computational Physics (physics.comp-ph)
[24] arXiv:2411.09074 [pdf, html, other]
Title: Finding high posterior density phylogenies by systematically extending a directed acyclic graph
Chris Jennings-Shaffer, David H Rich, Matthew Macaulay, Michael D Karcher, Tanvi Ganapathy, Shosuke Kiami, Anna Kooperberg, Cheng Zhang, Marc A Suchard, Frederick A Matsen IV
Subjects: Populations and Evolution (q-bio.PE)
[25] arXiv:2411.09030 [pdf, other]
Title: How to quantify interaction strengths? A critical rethinking of the interaction Jacobian and evaluation methods for non-parametric inference in time series analysis
Takeshi Miki, Chun-Wei Chang, Po-Ju Ke, Arndt Telschow, Cheng-Han Tsai, Masayuki Ushio, Chih-hao Hsieh
Comments: 39 pages, 5 figures and 2 tables
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)
[26] arXiv:2411.09172 (cross-list from cond-mat.stat-mech) [pdf, html, other]
Title: Coarsening and universality on a growing surface
Robert J. H. Ross, Simone Pigolotti
Subjects: Statistical Mechanics (cond-mat.stat-mech); Soft Condensed Matter (cond-mat.soft); Populations and Evolution (q-bio.PE)
[27] arXiv:2411.09054 (cross-list from q-bio.BM) [pdf, html, other]
Title: High fitness paths can connect proteins with low sequence overlap
Pranav Kantroo, Günter P. Wagner, Benjamin B. Machta
Subjects: Biomolecules (q-bio.BM); Populations and Evolution (q-bio.PE)
Total of 27 entries
Showing up to 50 entries per page: fewer | more | all