Quantitative Biology

Authors and titles for December 2005

[51] arXiv:cond-mat/0512092 (cross-list from cond-mat.soft) [pdf, other]

Title: Low energy states of a semiflexible polymer chain with attraction and the whip-toroid transitions

Yukitaka Ishimoto (RIKEN), Norio Kikuchi (U. Mainz)

Comments: final version: RevTeX4 double column, 15 pages, 6 figures (colour), some typos fixed, to appear in Journal of Chemical Physics

Journal-ref: J. Chem. Phys. 125 (2006) 074905

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Biomolecules (q-bio.BM)

[52] arXiv:cond-mat/0512119 (cross-list from cond-mat.stat-mech) [pdf, other]

Title: Traffic of Molecular Motors

Stefan Klumpp, Melanie J. I. Müller, Reinhard Lipowsky

Comments: 10 pages, latex, uses Springer styles (included), to appear in the Proceedings of "Traffic and Granular Flow 2005"

Journal-ref: Traffic and Granular Flow '05, edited by A. Schadschneider et al. (Springer, Berlin, 2007), pp. 251-261

Subjects: Statistical Mechanics (cond-mat.stat-mech); Subcellular Processes (q-bio.SC)

[53] arXiv:cond-mat/0512341 (cross-list from cond-mat.dis-nn) [pdf, other]

Title: Dynamical response of the Hodgkin-Huxley model in the high-input regime

Stefano Luccioli, Thomas Kreuz, Alessandro Torcini

Comments: 14 pages, 24 figures in eps, submitted to Physical Review E

Journal-ref: Phys. Rev. E 73, 041902 (2006)

Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn); Neurons and Cognition (q-bio.NC)

[54] arXiv:cond-mat/0512514 (cross-list from cond-mat.soft) [pdf, other]

Title: Adhesion of membranes via actively switched receptors

Bartosz Rozycki, Reinhard Lipowsky, Thomas R. Weikl

Comments: 5 pages, 6 figures; to appear in Physical Review Letters

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Subcellular Processes (q-bio.SC)

[55] arXiv:cs/0512052 (cross-list from cs.DS) [pdf, other]

Title: High-Throughput SNP Genotyping by SBE/SBH

Ion I. Mandoiu, Claudia Prajescu

Comments: 19 pages

Subjects: Data Structures and Algorithms (cs.DS); Genomics (q-bio.GN)

[56] arXiv:math/0512063 (cross-list from math.PR) [pdf, other]

Title: A microscopic interpretation for adaptive dynamics trait substitution sequence models

Nicolas Champagnat (WIAS)

Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)

[57] arXiv:nlin/0512025 (cross-list from nlin.AO) [pdf, other]

Title: Self-other organization: Why early life did not evolve through natural selection

Liane Gabora

Comments: Accepted for publication in Journal of Theoretical Biology. Replaced version includes second set of changes made to page proofs

Journal-ref: Gabora, L. (2006). Self-other organization: Why early life did not evolve through natural selection. Journal of Theoretical Biology, 241(3), 443-450.

Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Molecular Networks (q-bio.MN); Populations and Evolution (q-bio.PE)

[58] arXiv:nlin/0512048 (cross-list from nlin.AO) [pdf, other]

Title: Modeling Endogenous Social Networks: the Example of Emergence and Stability of Cooperation without Refusal

David Chavalarias (CREA)

Comments: 36 p

Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Other Condensed Matter (cond-mat.other); Computer Science and Game Theory (cs.GT); Multiagent Systems (cs.MA); Other Computer Science (cs.OH); Other Quantitative Biology (q-bio.OT); Populations and Evolution (q-bio.PE)

[59] arXiv:physics/0512028 (cross-list from physics.bio-ph) [pdf, other]

Title: Mechanism of cell inactivation by different ions: Damage induction probabilities per single tracks

Pavel Kundrát, Miloš Lokajíček, Hana Hromčíková, Libor Judas

Comments: Presented to the 14th Symposium on Microdosimetry, November 13-18, 2005, Venezia, Italy; submitted for the proceedings to be published in Radiat. Prot. Dosim

Subjects: Biological Physics (physics.bio-ph); Medical Physics (physics.med-ph); Quantitative Methods (q-bio.QM)

[60] arXiv:physics/0512029 (cross-list from physics.bio-ph) [pdf, other]

Title: Towards biology-oriented treatment planning in hadrontherapy

Pavel Kundrát

Comments: Presented to the 14th Symposium on Microdosimetry, November 13-18, 2005, Venezia, Italy; submitted for the proceedings to be published in Radiat. Prot. Dosim

Subjects: Biological Physics (physics.bio-ph); Medical Physics (physics.med-ph); Quantitative Methods (q-bio.QM)

[61] arXiv:physics/0512030 (cross-list from physics.bio-ph) [pdf, other]

Title: On the biophysical interpretation of lethal DNA lesions induced by ionizing radiation

Pavel Kundrát, Robert D. Stewart

Comments: Presented to the 14th Symposium on Microdosimetry, November 13-18, 2005, Venezia, Italy; submitted for the proceedings to be published in Radiat. Prot. Dosim

Subjects: Biological Physics (physics.bio-ph); Quantitative Methods (q-bio.QM)

[62] arXiv:physics/0512046 (cross-list from physics.bio-ph) [pdf, other]

Title: Hydrodynamic flow patterns and synchronization of beating cilia

Andrej Vilfan, Frank Julicher

Comments: 5 pages, 4 figures, v2: minor corrections

Journal-ref: Phys. Rev. Lett. 96, 058102 (2006)

Subjects: Biological Physics (physics.bio-ph); Cell Behavior (q-bio.CB)

[63] arXiv:physics/0512062 (cross-list from physics.pop-ph) [pdf, other]

Title: A Solution to the Fermi Paradox: The Solar System, part of a Galactic Hypercivilization?

Beatriz Gato-Rivera

Comments: Conference for general public given in the World Mystery Forum 2005, Interlaken (Switzerland), November 2005. Latex, 16 pages. Footnotes 11 and 12 added. Several minor improvements in the redaction. Spanish version available

Subjects: Popular Physics (physics.pop-ph); Astrophysics (astro-ph); General Relativity and Quantum Cosmology (gr-qc); High Energy Physics - Phenomenology (hep-ph); High Energy Physics - Theory (hep-th); Populations and Evolution (q-bio.PE)