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Quantitative Biology

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Total of 100 entries : 1-50 51-100 64-100
Showing up to 50 entries per page: fewer | more | all

Mon, 3 Mar 2025 (showing 25 of 25 entries )

[64] arXiv:2502.21268 [pdf, html, other]
Title: Stochastic dynamics at the back of a gene drive propagation wave
Léna Kläy (1), Léo Girardin (2), Florence Débarre (1), Vincent Calvez (3) ((1) Institute of Ecology and Environmental Sciences Paris (IEES Paris), Sorbonne Université, CNRS, IRD, INRAE, Université Paris Est Creteil, Université de Paris, Paris Cedex 5, France, (2) Institut Camille Jordan, UMR 5208 CNRS and Universite Claude Bernard Lyon 1, France, (3) CNRS, Univ Brest, UMR 6205, Laboratoire de Mathématiques de Bretagne Atlantique, France)
Subjects: Populations and Evolution (q-bio.PE)
[65] arXiv:2502.21217 [pdf, other]
Title: Dynamic Markov Blanket Detection for Macroscopic Physics Discovery
Jeff Beck, Maxwell J. D. Ramstead
Comments: 22 pages, 11 figures
Subjects: Neurons and Cognition (q-bio.NC)
[66] arXiv:2502.21129 [pdf, html, other]
Title: Microscopic Propagator Imaging (MPI) with Diffusion MRI
Tommaso Zajac, Gloria Menegaz, Marco Pizzolato
Subjects: Neurons and Cognition (q-bio.NC); Machine Learning (cs.LG); Biological Physics (physics.bio-ph); Medical Physics (physics.med-ph)
[67] arXiv:2502.21125 [pdf, html, other]
Title: Eukaryotes evade information storage-replication rate trade-off with endosymbiont assistance leading to larger genomes
Parthasarathi Sahu, Sashikanta Barik, Koushik Ghosh, Hemachander Subramanian
Subjects: Genomics (q-bio.GN)
[68] arXiv:2502.21072 [pdf, html, other]
Title: Innovation-exnovation dynamics on trees and trusses
Edward D. Lee, Ernesto Ortega-Díaz
Subjects: Populations and Evolution (q-bio.PE); Adaptation and Self-Organizing Systems (nlin.AO)
[69] arXiv:2502.20939 [pdf, html, other]
Title: Modeling cell differentiation in neuroblastoma: insights into development, malignancy, and treatment relapse
Simon F. Martina-Perez, Luke A. Heirene, Jennifer C. Kasemeier, Paul M. Kulesa, Ruth E. Baker
Subjects: Quantitative Methods (q-bio.QM); Tissues and Organs (q-bio.TO)
[70] arXiv:2502.20862 [pdf, html, other]
Title: Analysis of Evolving Cortical Neuronal Networks Using Visual Informatics
Ho Fai Po, Akke Mats Houben, Anna-Christina Haeb, Yordan P. Raykov, Daniel Tornero, Jordi Soriano, David Saad
Subjects: Neurons and Cognition (q-bio.NC); Disordered Systems and Neural Networks (cond-mat.dis-nn); Data Analysis, Statistics and Probability (physics.data-an); Physics and Society (physics.soc-ph)
[71] arXiv:2502.20753 [pdf, other]
Title: Deviance Detection and Regularity Sensitivity in Dissociated Neuronal Cultures
Zhuo Zhang, Amit Yaron, Dai Akita, Tomoyo Isoguchi Shiramatsu, Zenas C. Chao, Hirokazu Takahashi
Subjects: Neurons and Cognition (q-bio.NC)
[72] arXiv:2502.20602 [pdf, other]
Title: Evidence for strong modality-dependence of chronotype assessment from real world calendar app data
Sourabh Gapate, Royan Kamyar, Benjamin Smarr
Comments: 13 pages, 3 figures
Subjects: Other Quantitative Biology (q-bio.OT)
[73] arXiv:2502.20417 [pdf, html, other]
Title: Accurate 3D Grapevine Structure Extraction from High-Resolution Point Clouds
Harry Dobbs, Casey Peat, Oliver Batchelor, James Atlas, Richard Green
Subjects: Other Quantitative Biology (q-bio.OT); Image and Video Processing (eess.IV)
[74] arXiv:2502.20408 [pdf, html, other]
Title: Brain-Inspired Exploration of Functional Networks and Key Neurons in Large Language Models
Yiheng Liu, Xiaohui Gao, Haiyang Sun, Bao Ge, Tianming Liu, Junwei Han, Xintao Hu
Comments: 13 pages, 5 figures
Subjects: Neurons and Cognition (q-bio.NC); Artificial Intelligence (cs.AI); Computation and Language (cs.CL); Machine Learning (cs.LG)
[75] arXiv:2502.21290 (cross-list from cs.AI) [pdf, html, other]
Title: Contextualizing biological perturbation experiments through language
Menghua Wu, Russell Littman, Jacob Levine, Lin Qiu, Tommaso Biancalani, David Richmond, Jan-Christian Huetter
Comments: The Thirteenth International Conference on Learning Representations (2025)
Subjects: Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Quantitative Methods (q-bio.QM)
[76] arXiv:2502.21274 (cross-list from cs.LG) [pdf, html, other]
Title: BAnG: Bidirectional Anchored Generation for Conditional RNA Design
Roman Klypa, Alberto Bietti, Sergei Grudinin
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Biomolecules (q-bio.BM)
[77] arXiv:2502.21256 (cross-list from cs.LG) [pdf, html, other]
Title: ALVI Interface: Towards Full Hand Motion Decoding for Amputees Using sEMG
Aleksandr Kovalev, Anna Makarova, Petr Chizhov, Matvey Antonov, Gleb Duplin, Vladislav Lomtev, Viacheslav Gostevskii, Vladimir Bessonov, Andrey Tsurkan, Mikhail Korobok, Aleksejs Timčenko
Comments: 6 pages, video demo: this https URL
Subjects: Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[78] arXiv:2502.21167 (cross-list from math.DS) [pdf, html, other]
Title: Decomposable and essentially univariate mass-action systems: Extensions of the deficiency one theorem
Abhishek Deshpande, Stefan Müller
Comments: 29 pages, 3 figures
Subjects: Dynamical Systems (math.DS); Molecular Networks (q-bio.MN)
[79] arXiv:2502.21142 (cross-list from cs.AI) [pdf, html, other]
Title: Multimodal Dreaming: A Global Workspace Approach to World Model-Based Reinforcement Learning
Léopold Maytié, Roland Bertin Johannet, Rufin VanRullen
Comments: Under review in a conference
Subjects: Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[80] arXiv:2502.21077 (cross-list from cs.CV) [pdf, html, other]
Title: Enhancing deep neural networks through complex-valued representations and Kuramoto synchronization dynamics
Sabine Muzellec, Andrea Alamia, Thomas Serre, Rufin VanRullen
Subjects: Computer Vision and Pattern Recognition (cs.CV); Artificial Intelligence (cs.AI); Adaptation and Self-Organizing Systems (nlin.AO); Neurons and Cognition (q-bio.NC)
[81] arXiv:2502.21033 (cross-list from math.NA) [pdf, html, other]
Title: A data augmentation strategy for deep neural networks with application to epidemic modelling
Muhammad Awais, Abu Sayfan Ali, Giacomo Dimarco, Federica Ferrarese, Lorenzo Pareschi
Subjects: Numerical Analysis (math.NA); Machine Learning (cs.LG); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE); Machine Learning (stat.ML)
[82] arXiv:2502.20779 (cross-list from cs.CL) [pdf, html, other]
Title: Triple Phase Transitions: Understanding the Learning Dynamics of Large Language Models from a Neuroscience Perspective
Yuko Nakagi, Keigo Tada, Sota Yoshino, Shinji Nishimoto, Yu Takagi
Comments: 46 pages
Subjects: Computation and Language (cs.CL); Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[83] arXiv:2502.20773 (cross-list from physics.soc-ph) [pdf, html, other]
Title: Response of social norms to individual differences in error-proneness
Quang Anh Le, Seung Ki Baek
Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)
[84] arXiv:2502.20632 (cross-list from cond-mat.dis-nn) [pdf, html, other]
Title: Lattice Protein Folding with Variational Annealing
Shoummo Ahsan Khandoker, Estelle M. Inack, Mohamed Hibat-Allah
Comments: Github respository will be provided soon
Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn); Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Biomolecules (q-bio.BM)
[85] arXiv:2502.20600 (cross-list from physics.bio-ph) [pdf, html, other]
Title: Evolution and Pathogenicity of SARS-CoVs: A Microcanonical Analysis of Receptor-Binding Motifs
Rafael B. Frigori
Comments: 7 pages, 4 figures
Subjects: Biological Physics (physics.bio-ph); Statistical Mechanics (cond-mat.stat-mech); Quantitative Methods (q-bio.QM)
[86] arXiv:2502.20580 (cross-list from cs.LG) [pdf, html, other]
Title: Training Large Neural Networks With Low-Dimensional Error Feedback
Maher Hanut, Jonathan Kadmon
Subjects: Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[87] arXiv:2502.20406 (cross-list from physics.med-ph) [pdf, other]
Title: Reliability of characterising coronary artery flow with the flow-split outflow strategy: comparison against the multiscale approach
Mingzi Zhang, Hamed Keramati, Ramtin Gharleghi, Susann Beier
Comments: Figure: 6, Table: 2, 27 Pages
Subjects: Medical Physics (physics.med-ph); Fluid Dynamics (physics.flu-dyn); Tissues and Organs (q-bio.TO)
[88] arXiv:2502.20404 (cross-list from cond-mat.dis-nn) [pdf, html, other]
Title: Noise induced extreme events in single Fitzhugh-Nagumo oscillator
S. Hariharan, R. Suresh, V. K. Chandrasekar
Comments: Accepted for publication in Chaos Solitons Fractals
Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn); Chaotic Dynamics (nlin.CD); Neurons and Cognition (q-bio.NC)

Fri, 28 Feb 2025 (showing 12 of 12 entries )

[89] arXiv:2502.20349 [pdf, html, other]
Title: Naturalistic Computational Cognitive Science: Towards generalizable models and theories that capture the full range of natural behavior
Wilka Carvalho, Andrew Lampinen
Subjects: Neurons and Cognition (q-bio.NC); Artificial Intelligence (cs.AI)
[90] arXiv:2502.20275 [pdf, html, other]
Title: How cancer emerges: Data-driven universal insights into tumorigenesis via hallmark networks
Jiahe Wang, Yan Wu, Yuke Hou, Yang Li, Dachuan Xu, Changjing Zhuge, Yue Han
Subjects: Quantitative Methods (q-bio.QM)
[91] arXiv:2502.20117 [pdf, html, other]
Title: Eigenvector-Based Sensitivity Analysis of Contact Patterns in Epidemic Modeling
Evans Kiptoo Korir, Zsolt Vizi
Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)
[92] arXiv:2502.20076 [pdf, html, other]
Title: Purported quantitative support for multiple introductions of SARS-CoV-2 into humans is an artefact of an imbalanced hypothesis testing framework
Angus McCowan
Subjects: Quantitative Methods (q-bio.QM)
[93] arXiv:2502.20024 [pdf, other]
Title: Homeostatic Kinematic Growth Model for Arteries -- Residual Stresses and Active Response
Klemens Uhlmann, Daniel Balzani
Comments: 33 pages, 13 figures, 3 tables
Subjects: Quantitative Methods (q-bio.QM)
[94] arXiv:2502.19869 [pdf, other]
Title: Research on Event-Related Desynchronization of Motor Imagery and Movement Based on Localized EEG Cortical Sources
Yuqing Wang
Subjects: Neurons and Cognition (q-bio.NC); Signal Processing (eess.SP)
[95] arXiv:2502.19748 [pdf, html, other]
Title: A predator-prey model with age-structured role reversal
Luis Suarez, Maria K. Cameron, William F. Fagan, Doron Levy
Comments: 37 pages, 12 figures, 1 table
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)
[96] arXiv:2502.19574 [pdf, html, other]
Title: Leveraging Retrieval-Augmented Generation and Large Language Models to Predict SERCA-Binding Protein Fragments from Cardiac Proteomics Data
Taylor A Phillips, Alejandro W. Huskey, Patrick T. Huskey, Seth L. Robia, Peter M. Kekenes-Huskey
Subjects: Quantitative Methods (q-bio.QM)
[97] arXiv:2502.19565 [pdf, html, other]
Title: Noise-induced Extreme Events in Hodgkin-Huxley Neural Networks
Bruno R. R. Boaretto, Elbert E. N. Macau, Cristina Masoller
Journal-ref: Chaos, Solitons & Fractals, Volume 194, May 2025, 116133
Subjects: Neurons and Cognition (q-bio.NC); Applied Physics (physics.app-ph); Biological Physics (physics.bio-ph)
[98] arXiv:2502.19429 [pdf, html, other]
Title: scMamba: A Pre-Trained Model for Single-Nucleus RNA Sequencing Analysis in Neurodegenerative Disorders
Gyutaek Oh, Baekgyu Choi, Seyoung Jin, Inkyung Jung, Jong Chul Ye
Comments: 41 pages, 12 figures
Subjects: Genomics (q-bio.GN); Machine Learning (cs.LG)
[99] arXiv:2502.20319 (cross-list from math.DS) [pdf, html, other]
Title: Impilict Runge-Kutta based sparse identification of governing equations in biologically motivated systems
Mehrdad Anvari, Hamidreza Marasi, Hossein Kheiri
Comments: 23 pages, 9 figures
Subjects: Dynamical Systems (math.DS); Machine Learning (cs.LG); Numerical Analysis (math.NA); Quantitative Methods (q-bio.QM)
[100] arXiv:2502.19648 (cross-list from cond-mat.dis-nn) [pdf, html, other]
Title: Spectral Analysis of Representational Similarity with Limited Neurons
Hyunmo Kang, Abdulkadir Canatar, SueYeon Chung
Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
Total of 100 entries : 1-50 51-100 64-100
Showing up to 50 entries per page: fewer | more | all